PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J595800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 216aa    MW: 23177.4 Da    PI: 11.6833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J595800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.1e-202469147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+WT+eEd+ll +av+++G+++W+ I+++++ gR++k+c++rw + 
  Pavir.J595800.1.p 24 KGSWTPEEDDLLRRAVTRHGPRNWSVISAEIP-GRSGKSCRLRWCNQ 69
                       799*****************************.***********985 PP
2Myb_DNA-binding61.32e-1976120147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r ++T+eEd l+v a++q+G++ W+tIar++  gRt++++k++w++ 
  Pavir.J595800.1.p  76 RRAFTPEEDALIVAAHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 120
                        678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.4411974IPR017930Myb domain
SuperFamilySSF466898.27E-3122117IPR009057Homeodomain-like
SMARTSM007178.1E-172372IPR001005SANT/Myb domain
PfamPF002499.2E-202469IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-252577IPR009057Homeodomain-like
CDDcd001671.49E-152668No hitNo description
SMARTSM007175.3E-1675123IPR001005SANT/Myb domain
PROSITE profilePS5129420.62576125IPR017930Myb domain
PfamPF002494.5E-1676120IPR001005SANT/Myb domain
CDDcd001673.51E-1278121No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2378123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVVLPGGADG GGAPAGSGGP ARVKGSWTPE EDDLLRRAVT RHGPRNWSVI SAEIPGRSGK  60
SCRLRWCNQL SPGVERRAFT PEEDALIVAA HAQYGNKWAT IARMLHGRTD NSVKNHWNST  120
LRRHRRAAAA AANGGALPLR PLAAAAGPPP VPLRHLKLAD PRGVGAGLRR PPLDLKREED  180
DDEEDRGRGR NQRGLRASWR AQKRPCLGAP ALILL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-35231233103MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-351912353157MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-351912353157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-35231233103C-Myb DNA-Binding Domain
1msf_C2e-35231233103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J595800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276591e-125KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809452.18e-81transcription factor MYB77-like
SwissprotO231605e-53MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2S3HDC12e-79A0A2S3HDC1_9POAL; Uncharacterized protein
STRINGPavir.J33236.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-53myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]