PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J596000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 262aa MW: 27249.4 Da PI: 6.0399

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J596000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.8	2.8e-19	5	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd l+v a++q+G++ W+tIar++ gRt++++k++w++ Pavir.J596000.1.p 5 RRAFTPEEDALIVAAHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 49 678*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.07	1	54	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-20	1	52	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-15	3	54	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-16	4	52	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-16	5	49	IPR001005	SANT/Myb domain
CDD	cd00167	4.77E-13	7	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
PGVERRAFTP EEDALIVAAH AQYGNKWATI ARMLHGRTDN SVKNHWNSTL RRHRRAAAAA 60 ANGGALPLRP LAAAAGPPPV PLRHLKLADP EESAPASVVP FQPLDLKREE DDDEEDEDED 120 GTSEDSVLMA PPKKRPCLGA AHTHPSLSAA KQPEHTEPQP PTPAAEPVTS LTLSLPGGGG 180 GGTVSETPAL RGAAASAAST VDGAAKMRAK LEQDWPRLLP VIRQMIGEEV QRHLQGANVQ 240 ACSLVASPAG RAGAGAADGQ D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-15	1	52	52	103	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	2e-15	1	52	75	126	MYB TRANSFORMING PROTEIN
1mbj_A	2e-15	3	52	1	50	MYB PROTO-ONCOGENE PROTEIN
1mbk_A	2e-15	3	52	1	50	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-15	1	52	52	103	C-Myb DNA-Binding Domain
1msf_C	2e-15	1	52	52	103	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J596000.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969854	1e-69	EU969854.1 Zea mays clone 336503 mRNA sequence.
GenBank	KJ727659	1e-69	KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809452.1	1e-120	transcription factor MYB77-like
TrEMBL	A0A2S3HDC1	1e-118	A0A2S3HDC1_9POAL; Uncharacterized protein
STRING	Pavir.J19483.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-20	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Pavir.J596000.1.p