PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J600300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 183aa    MW: 19433.4 Da    PI: 5.2245
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J600300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-143279253
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        y GVr+++ +gr++AeIr p++   + r +lg+f+tae Aa a++  + ++
  Pavir.J600300.1.p 32 EYLGVRRRP-WGRYAAEIRNPVT---KERRWLGTFDTAEAAAVAYDLSAISI 79
                       588******.**********654...5999****************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-173190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-243289IPR001471AP2/ERF domain
SMARTSM003805.7E-243296IPR001471AP2/ERF domain
PROSITE profilePS5103220.6533290IPR001471AP2/ERF domain
PRINTSPR003672.2E-83344IPR001471AP2/ERF domain
CDDcd000189.21E-233389No hitNo description
PfamPF008471.3E-73377IPR001471AP2/ERF domain
PRINTSPR003672.2E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADAPVAHQA AASAQDLQQQ QQRRRRSRAS SEYLGVRRRP WGRYAAEIRN PVTKERRWLG  60
TFDTAEAAAV AYDLSAISIS GYAAARTNFY YPCGGATNLQ SQQPPPLPPH GPVQVAPVPP  120
SPLSEGSGIG STVDDCEYQQ LSAEEGGEEA GDDESLTIAA ILQSFRHQSA PSAAPSAPLC  180
LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1531891371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J600300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2417622e-70AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence.
GenBankAP0051642e-70AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03.
GenBankAP0149642e-70AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126162e-70CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820790.11e-69ethylene-responsive transcription factor LEP-like
SwissprotQ3E7031e-27ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A2T7D4581e-72A0A2T7D458_9POAL; Uncharacterized protein
STRINGPavir.Fb00452.1.p1e-129(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.16e-28ERF family protein