PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J636600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 660aa    MW: 76947.5 Da    PI: 8.2569
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J636600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.51.2e-1484162190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        ++Yn Y+ e+GF +r  k++ s+++    + +f+Cs+ gk+e + k         ++++t+Cka l++++  d+ w+v + + eHnH+l+
  Pavir.J636600.1.p  84 EYYNIYSWECGFGIRWGKKRWSEKK---RMLDFYCSCRGKAEGNVKM--------SSSKTDCKAVLRLHRALDNGWVVVEHNPEHNHPLS 162
                        69***************99999444...599*********9998777........999******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-1284162IPR004330FAR1 DNA binding domain
PfamPF105512.2E-16285350IPR018289MULE transposase domain
PROSITE profilePS5096610.336541577IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-6544575IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-6552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAPDDINSDC VCLDNSETIG CSIQVSTANS AENTKAQAWK KRPHQHGKPS ALQQAVMKFA  60
EHKYGNVMNP SIGTEFDNCD EAYEYYNIYS WECGFGIRWG KKRWSEKKRM LDFYCSCRGK  120
AEGNVKMSSS KTDCKAVLRL HRALDNGWVV VEHNPEHNHP LSETCGEKKH WPSHHHLDKY  180
TKDLVRMLRE NNIGITKLYT ILGNFFGSMQ NVPATKRCLK TLCQKINREQ AKNDIRKTLD  240
LIWELRKSDT GFMFSVDTDE EGRIKSLMWT NSRSRMQYEH FGDVTVLLGG VLMTDEKVES  300
FKWVFREFAS MMGGKEPKTI LTDQCRLMEV AIAEEWKNTI HRWCKWHVLK RVKECLGTKY  360
TSIKEFRDKF HLMLNEMLTI EEFEQSWAEL LKEYGLQSNT FLTQIYETRE KWVKIYFKGV  420
FCARMTSTQR SESANHMLKN ILSPGCTLRQ FIDQYMKMQY VRDEDENYEE RRNKLNMKKM  480
MFGGPLVVHA HKVYTLKVFA LFCELKEESE FYRALEVVEG IHYVAEHYDL SRVQRWCKGK  540
YEVQVHQGGS KYTCECGLFE HFGLPCSHIL RVMISTGVQL IPESMILQRW TKKARHMLPE  600
ELAQYRKDNP ALLAQTYIHS SLILKALRFV EMGDSNAEIH TMAMQILDNG IEALSEVSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J636600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J04136.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.19e-54FAR1 family protein