PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J679100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 639aa    MW: 73367.7 Da    PI: 8.1094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J679100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.61.2e-2426118191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn+YA   GFsvrk++ + +++++  t r++vCs++g++ee+  k + k+rr+r  tr+gC akl++ +++ +g+w+v+++  eHnH+la
  Pavir.J679100.1.p  26 QFYNTYALGKGFSVRKNYVEWNSEHTDLTLRRYVCSRQGYHEEKYVKkEIKKRRPRDITRVGCPAKLVIALDRnTGQWYVKNFIDEHNHTLA 117
                        6*******************999999**************99987663679999*****************999****************98 PP

               FAR1  91 p 91 
                        p
  Pavir.J679100.1.p 118 P 118
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-2326118IPR004330FAR1 DNA binding domain
PfamPF105516.1E-29239331IPR018289MULE transposase domain
PROSITE profilePS509669.05450490IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MADLESLLEY NEIVRKIFTN EDEGFQFYNT YALGKGFSVR KNYVEWNSEH TDLTLRRYVC  60
SRQGYHEEKY VKKEIKKRRP RDITRVGCPA KLVIALDRNT GQWYVKNFID EHNHTLAPAD  120
LSFLLRSHRK ISDARKAEIV ELGVAGIRKH QIFDIMEKQY DVYDKVGFIL RDLYNFCQLY  180
KQDIINDGDT QTAVSHLKER QNRDSKFFFK YMADGKGHVL GMFWCDTQCM LDYTAFGDVV  240
VFDSTYKTNR YNLPLVSFVG VNYHYRTVLF GCGNISHENT DSYVWLLKIF TESNAQKHPV  300
SVITDGDLAM QRAISVVWPN SPHKLCGWQI ELNLVRNVHN DTIKGAFRMY EMRQTWCAAY  360
HVGHCFLGLR SNQRSESMNS KLQMKLDGKM TLLEMVQHYE TCLTKVRRNE ADDDAKALQS  420
APFTEPDASI VDGDDTTEYI IGRRDRDIMY YVKCELTKEA NLKRISCPCR KLQSLGTPCS  480
HIFFVLGLRD ESKLPDCCVL ERWTMGANRA FPTIRKSTMY DYSPTLLRFR ELRNLSLAAA  540
FVASCSTEAY ERTKRVLEQE AAVIVPNAGA NEGKMYGPVL PQEPEVDCEE FRDVLDPMTV  600
PGRGAPKKKI KSSSNKSETT TKSSSKCSLC GGSATEWI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J679100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441960.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGPavir.J35119.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-69FAR1-related sequence 5