PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J693300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 144aa MW: 16580 Da PI: 8.9507

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J693300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.3e-22	45	132	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+vrk++++k+ +g+it+ +fvC keg+r+++k++ + ++ +raetrt+C+ +++k+++ ++ +v++l+leHnH l Pavir.J693300.1.p 45 FWLSYGGHKGFEVRKKYTNKRPSDGKITSCRFVCAKEGRRSQDKRD-HLTKCPRAETRTECQVYMNLKMDRkKEILKVSELVLEHNHGL 132 99***************************************999.999***************998999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.2E-18	45	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MEEEANKQEA NNAHHDSTTT ILLGLVRLVP QVGMEFRTSD EAWAFWLSYG GHKGFEVRKK 60 YTNKRPSDGK ITSCRFVCAK EGRRSQDKRD HLTKCPRAET RTECQVYMNL KMDRKKEILK 120 VSELVLEHNH GLHLPETLHL MVS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J693300.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151343.1	3e-67	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_020151344.1	3e-67	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453SK48	7e-66	A0A453SK48_AEGTS; Uncharacterized protein
STRING	BRADI2G59232.1	8e-56	(Brachypodium distachyon)
STRING	OS10T0571900-00	5e-56	(Oryza sativa)
STRING	Si032571m	3e-56	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.J693300.1.p