PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J697500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 409aa    MW: 43716 Da    PI: 5.2859
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J697500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27174232359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES.--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg.eHnhe 59 
                        D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver+++dp ++++tY+g +H h+
  Pavir.J697500.1.p 174 DPWAWRKYGQKPIKGSPYPRGYYRCSTDnDCKARKQVERCRDDPATLIVTYTGgDHSHP 232
                        89************************998**********************95389997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-28168234IPR003657WRKY domain
SuperFamilySSF1182901.03E-23170234IPR003657WRKY domain
SMARTSM007741.4E-30172233IPR003657WRKY domain
PfamPF031069.0E-23174232IPR003657WRKY domain
PROSITE profilePS5081127.795174234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEGDLPWCFG SSSNNWDLHA VVRFACGGGG RVTPAPDSDE SFLSWLPPQP QQQMDTAASW  60
QPLPADPALE DLCLQALLAA APKPETPQPA SPRNETPPKP PTSYRNAGGP TRSRRKYVSA  120
VKLITSIVDD FLAKCTSSSA HLIAGSIWIL FCRKKKSQVS KEVTRVPAGA PSPDPWAWRK  180
YGQKPIKGSP YPRGYYRCST DNDCKARKQV ERCRDDPATL IVTYTGGDHS HPVPLHRNSL  240
AGTTRNKAQP PASTSPGEEA PQPQPQPQVA PTASSADTKQ RQDSPSAPAG MFPATPLHCP  300
RPRAGVEREE EDEAEAVAAS LLLQDAEMEG EDDVLQFLKP AAGPDDGTVC KDTMLFPEPN  360
EADPGGGCWV DDVKLSPLIT GLPPWEAAAA IPAASSWAPG PGPDFCIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-15161234679Disease resistance protein RRS1
5w3x_D2e-15161234679Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J697500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686092e-82BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812935.11e-106WRKY transcription factor 22-like
TrEMBLA0A3L6S0331e-157A0A3L6S033_PANMI; WRKY transcription factor 22-like
STRINGPavir.J27189.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-36WRKY DNA-binding protein 27