PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J702100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 183aa MW: 20302.9 Da PI: 10.0209

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J702100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.1	3.4e-40	21	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppG+r Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P++L++ +++ ++++w+fF++r++++ +g+r+ r+t sgyWkatg+ Pavir.J702100.1.p 21 LPPGYRLYPTEEELLGFYLRHRLAGTRPQVEHFIPVVDIYSHHPSELRAmagAANVgDKEQWFFFCPRAERELNGSRPARTTPSGYWKATGS 112 79**************************999**********85345223335669*************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++ g k+t+ fy+grap+g+kt+W m+ey++ Pavir.J702100.1.p 113 PSYVYSAppASRVNGEKRTMDFYEGRAPTGTKTRWKMNEYKA 154 **9999999*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-42	18	158	IPR003441	NAC domain
PROSITE profile	PS51005	41.976	21	172	IPR003441	NAC domain
Pfam	PF02365	2.7E-20	22	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MLLKRGAMES SRSGSDHDPV LPPGYRLYPT EEELLGFYLR HRLAGTRPQV EHFIPVVDIY 60 SHHPSELRAM AGAANVGDKE QWFFFCPRAE RELNGSRPAR TTPSGYWKAT GSPSYVYSAP 120 PASRVNGEKR TMDFYEGRAP TGTKTRWKMN EYKAVAHRRR RGHPSGCGTS SACAACTPAT 180 AR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-29	21	162	17	150	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-29	21	162	17	150	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-29	21	162	17	150	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-29	21	162	17	150	NO APICAL MERISTEM PROTEIN
3swm_A	3e-29	15	162	10	153	NAC domain-containing protein 19
3swm_B	3e-29	15	162	10	153	NAC domain-containing protein 19
3swm_C	3e-29	15	162	10	153	NAC domain-containing protein 19
3swm_D	3e-29	15	162	10	153	NAC domain-containing protein 19
3swp_A	3e-29	15	162	10	153	NAC domain-containing protein 19
3swp_B	3e-29	15	162	10	153	NAC domain-containing protein 19
3swp_C	3e-29	15	162	10	153	NAC domain-containing protein 19
3swp_D	3e-29	15	162	10	153	NAC domain-containing protein 19
4dul_A	3e-29	21	162	17	150	NAC domain-containing protein 19
4dul_B	3e-29	21	162	17	150	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J702100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828029.1	2e-91	NAC domain-containing protein 90-like isoform X2
Swissprot	Q9M290	6e-49	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A3L6Q3I6	1e-91	A0A3L6Q3I6_PANMI; NAC domain-containing protein 90-like
STRING	Pavir.J13106.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.1	2e-45	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	Pavir.J702100.1.p