PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J710200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 263aa    MW: 28077.9 Da    PI: 7.4276
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J710200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.29e-12128102129
                NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                        +kktLvfy grap+g+kt+Wvmhe+rle
  Pavir.J710200.1.p   1 MKKTLVFYMGRAPRGSKTNWVMHEFRLE 28 
                        8************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-16154IPR003441NAC domain
PfamPF023652.6E-4127IPR003441NAC domain
PROSITE profilePS5100521.199154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MKKTLVFYMG RAPRGSKTNW VMHEFRLEGK SRHNNANLRF NPKDEWVVCK VHHKNGEASI  60
KNPAEEYSAG TPNVNSVVSD DAGEGDEFLD SMINPMYFNS AASLPSTTTI NAAPPHNADY  120
HSISSSAAGA TTTTTSSFVD LPNYGFNDAT IYNLHQQVAL ANSAASTNNS SSYSSFLWNM  180
LNADHNQAMG SYNLHHQAMV AKALGGNYFA GGLPSSSVSG ILQHNSQGVP QQKLGSNYGD  240
STAAIGPAAT NNKNLGALPV RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-13159116170NO APICAL MERISTEM PROTEIN
1ut4_B3e-13159116170NO APICAL MERISTEM PROTEIN
1ut7_A3e-13159116170NO APICAL MERISTEM PROTEIN
1ut7_B3e-13159116170NO APICAL MERISTEM PROTEIN
3swm_A3e-13159119173NAC domain-containing protein 19
3swm_B3e-13159119173NAC domain-containing protein 19
3swm_C3e-13159119173NAC domain-containing protein 19
3swm_D3e-13159119173NAC domain-containing protein 19
3swp_A3e-13159119173NAC domain-containing protein 19
3swp_B3e-13159119173NAC domain-containing protein 19
3swp_C3e-13159119173NAC domain-containing protein 19
3swp_D3e-13159119173NAC domain-containing protein 19
4dul_A3e-13159116170NAC domain-containing protein 19
4dul_B3e-13159116170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.262291e-110callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J710200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8409421e-57KC840942.1 UNVERIFIED: Miscanthus lutarioriparius NAC13-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808112.11e-131NAC domain-containing protein 45-like
TrEMBLA0A3L6PH651e-131A0A3L6PH65_PANMI; NAC domain-containing protein 77-like
STRINGPavir.J35302.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-20Arabidopsis NAC domain containing protein 87