PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J715000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 288aa    MW: 31463 Da    PI: 9.3906
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J715000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.67.7e-17531693127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        +GfrF+Pt  e  ++yL + v+g +l+++   vi+++ +y +eP dL ++++   ++ + +fF++ +k        +r +  g+W  +   +
  Pavir.J715000.1.p  53 RGFRFNPTPLEAATYYLPRLVAGAPLHEAVrpVIHHAAVYACEPADLARQFRPmpRTGHRFFFTSCRKG------VRR-AGPGFWTLQRM-T 136
                        7************************55532226**************8644442244477999888764......355.577***98866.6 PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         +++ kg++vg  k L +     ++g  tdW+m+ey+
  Pavir.J715000.1.p 137 VIMDGKGAKVGEIKKLRYK----KRGAYTDWLMDEYS 169
                        7888899**********97....78889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-2143191IPR003441NAC domain
PROSITE profilePS5100521.37951191IPR003441NAC domain
PfamPF023651.3E-1053169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MADRTEEPRA GRRKRGVFCQ YKTRRFSTAA PIPPAFPRIL EMAPLLGAEI FSRGFRFNPT  60
PLEAATYYLP RLVAGAPLHE AVRPVIHHAA VYACEPADLA RQFRPMPRTG HRFFFTSCRK  120
GVRRAGPGFW TLQRMTVIMD GKGAKVGEIK KLRYKKRGAY TDWLMDEYST CCSEDAVVGD  180
RQYVFCNIYV SPKAAPDSAA RQESAAFLAP PSTAPAPAPV VIAQAPPPKR PAPQAAEAPC  240
SKRTRGAVFA ASQLPSEESP AADQDDELVE STERIVPTAE AEEAAAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J715000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827463.11e-126atherin-like
TrEMBLA0A2T8I7921e-125A0A2T8I792_9POAL; Uncharacterized protein
STRINGPavir.J16079.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-11NAC domain containing protein 53