PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J728100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 271aa    MW: 28053.1 Da    PI: 10.3956
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J728100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.7e-18149183135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pavir.J728100.1.p 149 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 183
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-18143193IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-15143180IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.571143179IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-16145207No hitNo description
CDDcd002023.56E-15148195No hitNo description
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
PfamPF003208.5E-16149183IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGEGDDAFAA EDLQKLKLIS GGFSSAVNVP PAPVAPAAPA SAASAAQPGM FLPEAPVPAK  60
ARSKRSRVAP GNWSSRLLVL PPPPASPPSP ASMAISPAES GVSAQAFPAK KPSKPSRKKD  120
APPVPQAQPS SAPGAQPGGS AASAEGRRCL HCETDKTPQW RTGPMGPKTL CNACGVRYKS  180
GRLVPEYRPA ASPTFVMSKH SNSHRKVLEL RRQNEVQHQP PHVIAGGGPG GIMHMPSPLL  240
FDGPAAPPVI AGDDHFLIHH HLGADYRQLI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227511e-143root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J728100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.11e-143GATA transcription factor 12
TrEMBLK3XIL31e-142K3XIL3_SETIT; GATA transcription factor
STRINGPavir.J13538.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-49GATA transcription factor 12