PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J728200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 293aa    MW: 29721 Da    PI: 4.3332
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J728200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.87.3e-14267293127
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCG 27 
                        C +C t kTp+WR gp g+ktLCnaCG
  Pavir.J728200.1.p 267 CLHCETDKTPQWRTGPLGPKTLCNACG 293
                        99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.7E-11261293IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.71E-10261293No hitNo description
PROSITE profilePS5011412.308261293IPR000679Zinc finger, GATA-type
SMARTSM004010.0013261293IPR000679Zinc finger, GATA-type
CDDcd002027.26E-11266293No hitNo description
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
PfamPF003202.0E-11267293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEAAAAAEYG YYGGGAAPRE RKPAGCGDHF VVDDLLVLPY DDDEEGDGEA APGDGEAPPC  60
LQPVKEEGGL GNFSADSSTV TALDSCSNSF SGLGDGDFAG EFCEPYDQLA ELEWLSNYMG  120
EGDDAFAAED LQKLKLISGG FSSAVNVPPA PVAPAAPASA ASAAQPGMFL PEAPVPAKAR  180
SKRSRVAPGN WSSRLLVLPP PPASPPSPAS MAIAPAESGV SAQAFAAKKP SKPSKKKDGP  240
PVPQAQPSSA PGAQPGGSAA SAEGRRCLHC ETDKTPQWRT GPLGPKTLCN ACG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227510.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J728200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817761.11e-136GATA transcription factor 12-like
TrEMBLA0A3L6R1111e-137A0A3L6R111_PANMI; GATA transcription factor 12
STRINGPavir.J27336.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.18e-15GATA transcription factor 12