PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J739400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 264aa    MW: 29631.3 Da    PI: 8.3235
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J739400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.41.4e-18117179259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST..TEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp..kvveitYegeHnhe 59 
                        +D ++WrKYG K++ ++e+pr YY+C ++   +Cp+kk v+++++ +   ++ +t  +eH++e
  Pavir.J739400.1.p 117 NDRFHWRKYGEKNILNAEYPRLYYKCGYSddhKCPAKKYVQQQSNSGptPLFMVTLINEHTCE 179
                        79*************************998899********9987652257999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-20107179IPR003657WRKY domain
PROSITE profilePS5081114.458111179IPR003657WRKY domain
SuperFamilySSF1182907.19E-19111179IPR003657WRKY domain
SMARTSM007747.8E-27116180IPR003657WRKY domain
PfamPF031061.9E-19117179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSTRLSSAKN SQPPRSSSDR MDAAIQELRR GTRLADLLRQ QVELIPELER RHAAVANVGE  60
ISTAMESSLS LLQSEMERPP PLRNGAVARA RRRVRHWRGR HGAELPMKEI LTEAPENDRF  120
HWRKYGEKNI LNAEYPRLYY KCGYSDDHKC PAKKYVQQQS NSGPTPLFMV TLINEHTCET  180
LFPNDPCSSS SSASQVLDFT KASLSPPVMA AAAPGLKKEE EDSMSVSMHR QHSYPYDEYL  240
SSSFPTMSPD GDHQVKFSPG PGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J739400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808777.11e-142probable WRKY transcription factor 62
TrEMBLA0A2S3HB391e-140A0A2S3HB39_9POAL; Uncharacterized protein
STRINGPavir.J16737.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-14WRKY family protein