PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J739400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 194aa    MW: 21604.1 Da    PI: 7.5663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J739400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.27.8e-1947109259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST..TEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp..kvveitYegeHnhe 59 
                        +D ++WrKYG K++ ++e+pr YY+C ++   +Cp+kk v+++++ +   ++ +t  +eH++e
  Pavir.J739400.2.p  47 NDRFHWRKYGEKNILNAEYPRLYYKCGYSddhKCPAKKYVQQQSNSGptPLFMVTLINEHTCE 109
                        79*************************998899********9987652257999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-2037109IPR003657WRKY domain
PROSITE profilePS5081114.45841109IPR003657WRKY domain
SuperFamilySSF1182903.79E-1941109IPR003657WRKY domain
SMARTSM007747.8E-2746110IPR003657WRKY domain
PfamPF031061.0E-1947109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAACSSDGGT GERNGAVARA RRRVRHWRGR HGAELPMKEI LTEAPENDRF HWRKYGEKNI  60
LNAEYPRLYY KCGYSDDHKC PAKKYVQQQS NSGPTPLFMV TLINEHTCET LFPNDPCSSS  120
SSASQVLDFT KASLSPPVMA AAAPGLKKEE EDSMSVSMHR QHSYPYDEYL SSSFPTMSPD  180
GDHQVKFSPG PGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J739400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808777.11e-101probable WRKY transcription factor 62
TrEMBLA0A2S3HB392e-99A0A2S3HB39_9POAL; Uncharacterized protein
STRINGPavir.J16737.1.p5e-99(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.28e-15WRKY family protein