PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J739500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 294aa    MW: 31718.3 Da    PI: 4.7169
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J739500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-27116175258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        +Dg+ WrKYGqKe++gs++pr Y+rCt++   gC+++++v+rs+ dp+v+ itY g+H++
  Pavir.J739500.1.p 116 EDGFIWRKYGQKEIHGSKYPRLYFRCTYKddhGCTARRQVQRSDADPSVFLITYLGDHTC 175
                        8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-25109175IPR003657WRKY domain
PROSITE profilePS5081122.274110173IPR003657WRKY domain
SuperFamilySSF1182904.71E-24111175IPR003657WRKY domain
SMARTSM007742.7E-37115177IPR003657WRKY domain
PfamPF031066.8E-25116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAMASSAPAC AASELVAKGR ESAAVLQALL AGQQPAVGAV VETPHGLQEL TEQILRCCDR  60
ALAALRSGTA EGAAASGGTR KRKPERGYGP AAPPATSSKR TRGERGTRVE KRRTIEDGFI  120
WRKYGQKEIH GSKYPRLYFR CTYKDDHGCT ARRQVQRSDA DPSVFLITYL GDHTCCRGDD  180
EPLAPFVIIN FGSSSSDGLP SRSSPWPSCD DDGPGPVVCK SPDLCNSPEE ELRSGMDNES  240
SSEFIDQSTP VPEPTSMSPM DGCLLDWTLC DEESSFDIGE FVGQDYFDYF GLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-23113175668OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J739500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281981e-51KJ728198.1 Zea mays clone pUT6472 WRKY transcription factor (WRKY44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.11e-158probable WRKY transcription factor 70
TrEMBLA0A2T7ECG01e-164A0A2T7ECG0_9POAL; Uncharacterized protein
STRINGPavir.J07662.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-24WRKY DNA-binding protein 46