PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J748200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 326aa    MW: 36448.6 Da    PI: 6.0844
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J748200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.29e-20181245359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                        Dg +WrKYGqK+++++++prsYYrCt++   gC+++k v+++++      p + +++Y+g+H+++
  Pavir.J748200.1.p 181 DGRQWRKYGQKHINNAKHPRSYYRCTYRqeqGCKATKTVQQQDDssgadHPLMYTVVYHGQHTCK 245
                        999************************98899********98742222146799*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-23174245IPR003657WRKY domain
SuperFamilySSF1182905.23E-21175245IPR003657WRKY domain
SMARTSM007741.1E-31179246IPR003657WRKY domain
PROSITE profilePS5081115.33181221IPR003657WRKY domain
PfamPF031066.8E-24181245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKHHGSSMGL PQPSVSSDRP SLVCDHHRPA MKEVARGQSL VTQLRAIVLP ALQADERSEI  60
VAQMFQSILD CSSKAMAELQ QLHRSRNARP DDDDVLVDDK KRVRRISSDC CSKEEAIAGD  120
SGSYSRRFKT LLLTLIIIAR EGTISWGLIS SFESITKQIP FNLERLCDDS VSLETPVPHY  180
DGRQWRKYGQ KHINNAKHPR SYYRCTYRQE QGCKATKTVQ QQDDSSGADH PLMYTVVYHG  240
QHTCKDNDGV NSGADESEIN ARSSSDTQSS ISSTCTDTYD QQTSLHDNKL IDKSEDVYEP  300
FDMAAFAPLD LDSWELDALL RFGSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-151812451069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J748200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.11e-134probable WRKY transcription factor 63
TrEMBLK3Y9721e-132K3Y972_SETIT; Uncharacterized protein
STRINGPavir.J34713.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-18WRKY DNA-binding protein 70