PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J755500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 533aa    MW: 56526.1 Da    PI: 6.8363
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J755500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.32e-253124483128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra......tksgyWkat 86 
                        +G+rF+Ptde+l+ ++L+ k +g+++++  ++k++d+y++ P+  ++  +v  ++  wy Fs+rd+ky++g r++r+       + gyWk+ 
  Pavir.J755500.1.p 312 AGVRFRPTDEDLI-FFLRLKHAGREIPV-GFFKDFDVYQASPEASKAacEVVDGDGCWYAFSPRDRKYKNGGRPQRSvveadgQQLGYWKSN 401
                        7************.9*************.99************99843455557779*******************6466665559****** PP

                NAM  87 gkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k  +vl++     k+ ++g  ++L+f+ g++p+g++t W m+ey++
  Pavir.J755500.1.p 402 TKLAQVLTSgedegKKVVTGNVTSLTFHVGHQPHGRQTPWKMKEYAI 448
                        ******99877765555699*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-33310473IPR003441NAC domain
PROSITE profilePS5100532.47310473IPR003441NAC domain
PfamPF023652.4E-13312447IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVIVSAVDEL ASSHPHAAAG SAGRASQPPA SNPEPLLFDN LFWGAAAYPA AAGTAAWSPH  60
PPYASTSATS GGFDPSSSPL LSGSMMDPFS AQLPPLRVVP PAMAEPSYYY HQPTMLGFLP  120
HFAPGPFAQG AIAAPPPVLV PMQTTSVEPA YYYPQAQGAA GEEAATVHHA VPEAQKAQET  180
TAPTPQRRGR PRKTAAAASK PVFKAPKKRA TARSNRAASQ QAATSATNDL ATIVGQALVQ  240
KPEQAASVAA ASTSDAAQAA PCRNPTPPLC QEQWRPQSTC SSSLGAGGQA AAVVAGQQEV  300
TLPYAYAETS AAGVRFRPTD EDLIFFLRLK HAGREIPVGF FKDFDVYQAS PEASKAACEV  360
VDGDGCWYAF SPRDRKYKNG GRPQRSVVEA DGQQLGYWKS NTKLAQVLTS GEDEGKKVVT  420
GNVTSLTFHV GHQPHGRQTP WKMKEYAIPD NEHAPDGSAM RLNDWVVCKL FYKERVISAR  480
KKKNQSGEDG KNVDQAGGEQ GTQMVSTDVQ THGDFEQDLC VVDYPGYDDA FA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-2031347420166NO APICAL MERISTEM PROTEIN
1ut4_B5e-2031347420166NO APICAL MERISTEM PROTEIN
1ut7_A5e-2031347420166NO APICAL MERISTEM PROTEIN
1ut7_B5e-2031347420166NO APICAL MERISTEM PROTEIN
3swm_A5e-2031347423169NAC domain-containing protein 19
3swm_B5e-2031347423169NAC domain-containing protein 19
3swm_C5e-2031347423169NAC domain-containing protein 19
3swm_D5e-2031347423169NAC domain-containing protein 19
3swp_A5e-2031347423169NAC domain-containing protein 19
3swp_B5e-2031347423169NAC domain-containing protein 19
3swp_C5e-2031347423169NAC domain-containing protein 19
3swp_D5e-2031347423169NAC domain-containing protein 19
4dul_A5e-2031347420166NAC domain-containing protein 19
4dul_B5e-2031347420166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192RRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J755500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6S3Y60.0A0A3L6S3Y6_PANMI; Uncharacterized protein
STRINGPavir.J01596.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-25NAC domain containing protein 32