PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J756800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 225aa    MW: 23984.5 Da    PI: 4.72
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J756800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-184091155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr++   grWv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Pavir.J756800.1.p 40 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 91
                       68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-144091IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2041101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-3041101IPR001471AP2/ERF domain
SMARTSM003801.7E-2541105IPR001471AP2/ERF domain
PROSITE profilePS5103222.3134199IPR001471AP2/ERF domain
PRINTSPR003671.2E-54253IPR001471AP2/ERF domain
PRINTSPR003671.2E-56581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEYDEQESPE AAAGEEYATV MSAPPKRPAG RTKFRETRHP VYRGVRRRGP AGRWVCEVRE  60
PNKKSRIWLG TFATAEAAAR AHDVAALALR GRAACLNFAD SARLLRVDPA TLATPEDIRR  120
AAIELAEGSA QQDAAAAVAS SSSGADAAAP MAMAMHHQQD AAPYDYAAMY GNMDFDQPYY  180
YDGMGGAAAI GGNDWQAGWH VDADDDGAAA AGCGSDMTLW SYYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1439981271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.17870.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J756800.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858981e-144AY785898.1 Sorghum bicolor SbCBF5 (CBF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813816.11e-101dehydration-responsive element-binding protein 1C-like
SwissprotA2Y8S62e-70DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV32e-70DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLA0A2T7E3L81e-106A0A2T7E3L8_9POAL; Uncharacterized protein
STRINGPavir.J35991.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-33C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  2. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  3. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  4. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]