PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J762700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 607aa    MW: 69986.7 Da    PI: 8.2396
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J762700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.53.3e-1695174190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn Y+ ++GF ++ ++s++++ +++ t ++ vC + gk+++e+++         + ++gC a +++ + k+g w+v++ + +HnH+la
  Pavir.J762700.1.p  95 EFYNLYSWQIGFGIQYDRSHRNN-EKTKTIQDIVCVCAGKPRKENSR---------SAHCGCPAIMRIARAKTGGWYVKEHVADHNHQLA 174
                        6*****************99995.55578899********9997665.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1395174IPR004330FAR1 DNA binding domain
PfamPF105516.1E-16267332IPR018289MULE transposase domain
PfamPF105511.0E-6358385IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MDEGGVFGES FPFEIPAVGP SLLPEFDAGS ESGLGRIRDT RYGPRVGQLA DEQEETTLNP  60
TALEKALRSF AARKNGLVVQ PTVGTHFDSM AEALEFYNLY SWQIGFGIQY DRSHRNNEKT  120
KTIQDIVCVC AGKPRKENSR SAHCGCPAIM RIARAKTGGW YVKEHVADHN HQLAQSFAEK  180
QMWRSHLFFG SFGNAPFTKR SVRTSCAKLA KENATDDIGK TVALFSKLKE EDPDFTYSIE  240
LDDNSRVKTL LWTNGRSRRQ YACFGDVITF DTTYKTNLYD MPFGLFIGVN NHFQSIVLGG  300
VLMRNETIKS FKWIFSEFVR LMGGKHPVTI LTGTTLFDCL LISVPHGDIL LMGFAYHADQ  360
SKAMEAAIKE VFPDTTHRWC RWHILWKAKE HLGELYTRRS GFKEEFHKII NSMLTIEEFE  420
FAWQYMLDKY NVRNNSFLAQ IYENRYKWAK PYFKGKFCAG QTSTQRSESG NSMLKRYVGS  480
SCPMHQFVQM YQQLQFDREE EESREELASK RDGRLIKYNI PLEAHAARVY TRNMYEKFGQ  540
LIFDSGNYVA AEVIPQMRYV TKHVRADRRE KWEKVEFQVD VLRNGEEYIC ECGLAEHMGM  600
ICPRIIR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.355900.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J762700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185807.10.0uncharacterized protein LOC109771528
TrEMBLA0A453CI810.0A0A453CI81_AEGTS; Uncharacterized protein
TrEMBLA0A453CIB20.0A0A453CIB2_AEGTS; Uncharacterized protein
STRINGPavir.J29325.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-68FAR1-related sequence 5