PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J769800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 189aa    MW: 20743.9 Da    PI: 4.3225
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J769800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.91.8e-27161158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                       ++Dg+ WrKYGqK+++gs++pr Y+rCt++   gC+++++v+rs+ dp+v++itY geH++
  Pavir.J769800.1.p  1 MEDGFVWRKYGQKDIHGSKHPRLYFRCTYKddhGCMARRQVQRSEADPSVFHITYFGEHTC 61
                       58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.504159IPR003657WRKY domain
SuperFamilySSF1182907.85E-24162IPR003657WRKY domain
SMARTSM007745.6E-38163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-25261IPR003657WRKY domain
PfamPF031061.2E-25261IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEDGFVWRKY GQKDIHGSKH PRLYFRCTYK DDHGCMARRQ VQRSEADPSV FHITYFGEHT  60
CCRDDGVAES PAPFVINFGA STRDGQQLIR GSLWSSSCDD DGGLAVSETS DLCHSPEVKE  120
VRAGMGNVPD ESSSEQSTPP PVPELTSMSS PEWDSLDGCL LWDDIGLGGS LFDDIDKFAP  180
LDCVGLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22161868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J769800.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281981e-53KJ728198.1 Zea mays clone pUT6472 WRKY transcription factor (WRKY44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809543.11e-112probable WRKY transcription factor 38
TrEMBLA0A3L6R9N81e-112A0A3L6R9N8_PANMI; WRKY transcription factor
STRINGPavir.J35902.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-24WRKY DNA-binding protein 46