PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J776500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 261aa    MW: 27614.8 Da    PI: 5.2551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J776500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09163187731
                        HHHHHHHHHHHHHHHHHHCTSCCC. CS
                HLH   7 erErrRRdriNsafeeLrellPkas 31 
                        ++ErrRR+r+N++++ Lr+++Pk  
  Pavir.J776500.1.p 163 MAERRRRKRLNDRLSMLRSIVPKTQ 187
                        79*********************52 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.35E-6160187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6163187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-7163189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRREAA PWQGYPGGVM MSDLLFYGAD ARSGGGMDLP PFQELVPMPP  60
AAPPHEEFNF DCLSEVCNPY RSSGVAAPGE AAPGQTLDAP LHDAMVDEEP SGDKGQCYGG  120
GGSSPTFVFG GGAGESSEMA PIRGVGGPHH KTKLHGAPSK NLMAERRRRK RLNDRLSMLR  180
SIVPKTQQGE EGVGLGEEAV VPRTGETAPR AETEDGREGG EGREGEKPRR LRPAGRPYAG  240
GGGMAGGGGQ RRKRRLADTM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.25420.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J776500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796859.18e-99transcription factor bHLH61-like
TrEMBLA0A3L6SBZ84e-98A0A3L6SBZ8_PANMI; Transcription factor bHLH61-like
STRINGPavir.Ib00206.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.17e-09bHLH family protein