PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J782100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 403aa MW: 43162.3 Da PI: 9.674

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J782100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	30.1	1.4e-09	6	95	54	127
NAM 54 eekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk..kgel............vglkktLvfykg..rapkgektdWvmheyr 127 +++wyf s+r+++y+ g+r++r t+ +g+ k k+ + ++ + + + +tL++y g r+++ +kt+W+mhe + Pavir.J782100.1.p 6 ADDNWYFLSPRSRRYPGGDRPTRRTAdnRGRLKPGRKKGAADHSkaS--KgrprknlsvgaiEFTENTLAYYVGepRNENETKTKWLMHELT 95 5679**************999655346666654444444443330..23445556666658899**5544888999******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.858	1	127	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-11	5	127	IPR003441	NAC domain
Pfam	PF02365	1.2E-4	8	95	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
YQKRGADDNW YFLSPRSRRY PGGDRPTRRT ADNRGRLKPG RKKGAADHSK ASKGRPRKNL 60 SVGAIEFTEN TLAYYVGEPR NENETKTKWL MHELTVPELD KEKGPENAAG EKPRELNKYV 120 MCRIYKSPLK KWRELEDDKG STSSASAPAP APACDEPAPT SSRSGPQPET VAETRATSSK 180 SAGKRPAVEQ PSGLAANALN KRASSGYYHG VPGLPPLMQW PPPPMYNSMQ GPVQLQRPPL 240 TYGPHGQAPP VLRLCPPHRT ASAVPNSLGR TAARLSFAGQ QHVRPTASTQ PACFDEGANL 300 NHPAGAEAMV PRTQFPAPHN FYPCSGVQQQ QQQSSSPAIP AAIVPPGAAG PVDVEATPAA 360 DDAPGKLSVP GDANQGSAKG DCYGYSNQLF EDLLADLAPL KN*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

YQKRGADDNW YFLSPRSRRY PGGDRPTRRT ADNRGRLKPG RKKGAADHSK ASKGRPRKNL  60
SVGAIEFTEN TLAYYVGEPR NENETKTKWL MHELTVPELD KEKGPENAAG EKPRELNKYV  120
MCRIYKSPLK KWRELEDDKG STSSASAPAP APACDEPAPT SSRSGPQPET VAETRATSSK  180
SAGKRPAVEQ PSGLAANALN KRASSGYYHG VPGLPPLMQW PPPPMYNSMQ GPVQLQRPPL  240
TYGPHGQAPP VLRLCPPHRT ASAVPNSLGR TAARLSFAGQ QHVRPTASTQ PACFDEGANL  300
NHPAGAEAMV PRTQFPAPHN FYPCSGVQQQ QQQSSSPAIP AAIVPPGAAG PVDVEATPAA  360
DDAPGKLSVP GDANQGSAKG DCYGYSNQLF EDLLADLAPL KN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J782100.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823986.1	1e-121	NAC domain-containing protein 22-like
TrEMBL	A0A3L6Q9A2	0.0	A0A3L6Q9A2_PANMI; Uncharacterized protein
STRING	Si010053m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19368	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	3e-11	NAC domain containing protein 32

Link Out ? help Back to Top
Phytozome	Pavir.J782100.1.p