PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000023.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YB

Protein Properties

Length: 173aa MW: 19040.3 Da PI: 9.0608

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000023.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	149.2	8.4e-47	1	81	17	97
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 mkk lPan+k+skdaketvqecvsefisf+t+easdkcqrekrkting+dllwa++tlGfe+yveplkvyl+k+re+egek Pbr000023.1 1 MKKGLPANGKVSKDAKETVQECVSEFISFITGEASDKCQREKRKTINGEDLLWAMTTLGFEEYVEPLKVYLHKFREMEGEK 81 9******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	8.7E-21	1	55	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.53E-32	1	88	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-42	1	100	IPR009072	Histone-fold
PRINTS	PR00615	1.1E-21	19	37	No hit	No description
PROSITE pattern	PS00685	0	22	38	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.1E-21	38	56	No hit	No description
PRINTS	PR00615	1.1E-21	57	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKKGLPANGK VSKDAKETVQ ECVSEFISFI TGEASDKCQR EKRKTINGED LLWAMTTLGF 60 EEYVEPLKVY LHKFREMEGE KMTGSTNTSA GTGTGMSAGH GRHADRYHRD HEREQLYVHG 120 HGAARDSING MYGVMSTQST TMMTMGHQQN HHRGGHLYGS GGKPSTGHGR PR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	9e-39	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	9e-39	1	76	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000023.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031158	1e-50	KT031158.1 Glycine max clone HN_CCL_197 CCAAT transcription factor (Glyma15g12570.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352424.1	1e-126	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	Q75IZ7	4e-52	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A498K2H3	1e-75	A0A498K2H3_MALDO; Uncharacterized protein
STRING	XP_009352424.1	1e-125	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37900	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-51	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]