PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000203.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Protein Properties

Length: 169aa MW: 19859.7 Da PI: 7.7574

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000203.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.9	6.5e-12	54	160	3	95
EE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS..............-EEEEEE..EEETTEEEE-TTHH.HHHHHH CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg..............rsWevkliyrkksgryvltkGWk.eFvkan 72 k l +sd ++++rl +pk+ +++h ++k + ++k+ +++++ y+l +GW+ eFv Pbr000203.1 54 KRLATSDLGELSRLLMPKEAVRKHimsylddklakmvDSK-------------EglpvtvvdwdtcnrHELTFKH--WNSGDFYILNGGWRpEFVVRR 136 78899*****************8876655555543333.............3355555555558566777777..*********879* PP T--TT-EEEEEE-SS.SEE..EEE CS B3 73 gLkegDfvvFkldgr.sefelvvk 95 gLke+D + ++ld++ ++ ++ ++ Pbr000203.1 137 GLKENDEIGLYLDWDwKTSKYIFR 160 ***********99888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.16E-16	49	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.93E-12	50	161	No hit	No description
SMART	SM01019	0.0038	52	162	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.9E-12	53	160	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.7E-9	54	160	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKLEEEDHHP SKVRLFGIGL GSSLNDLRGG HELSTDLYLW DPTWDYNSIW KIRKRLATSD 60 LGELSRLLMP KEAVRKHIMS YLDDKLAKMV DSKEGLPVTV VDWDTCNRHE LTFKHWNSGD 120 FYILNGGWRP EFVVRRGLKE NDEIGLYLDW DWKTSKYIFR FSVLQRTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000203.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352883.1	1e-121	PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBL	A0A498K0T1	1e-112	A0A498K0T1_MALDO; Uncharacterized protein
STRING	XP_009352883.1	1e-120	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF579	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	4e-18	B3 family protein