PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000358.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LSD

Protein Properties

Length: 123aa MW: 13260.1 Da PI: 6.9682

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000358.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	43.4	5.7e-14	33	57	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YPrGA++V C++C+tV Pbr000358.1 33 CGSCRRLLKYPRGATHVECSCCQTV 57 ************************9 PP
2	zf-LSD1	48	2.1e-15	71	95	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GApsVRC++C++V Pbr000358.1 71 CGSCAVLLMYPYGAPSVRCSSCHFV 95 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.3E-18	30	60	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-11	33	57	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.9E-12	68	97	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.5E-13	71	95	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MESKVEVDEA PQPELQSIAA QPSPPSEIAQ MVCGSCRRLL KYPRGATHVE CSCCQTVNFV 60 LEAHQVGQVK CGSCAVLLMY PYGAPSVRCS SCHFVTEVGE HNKRPPWSVQ QGQSPTPPNP 120 VH*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000358.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009338990.1	5e-85	PREDICTED: protein LOL2-like isoform X1
Swissprot	O65426	4e-43	LOL2_ARATH; Protein LOL2
TrEMBL	A0A498K1H3	1e-79	A0A498K1H3_MALDO; Uncharacterized protein
STRING	XP_009338990.1	2e-84	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-45	lsd one like 2