PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000385.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 379aa MW: 41134.1 Da PI: 8.4002

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000385.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	70	130	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Pbr000385.1 70 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 130 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	72	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	74	128	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	75	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MLSNCDHEKM ALLISSTTNE WPQLQQDIQI DDIHHQKGLN NNNNNVRSSS TSSPANRIME 60 KPGQEQLQLQ QQALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG 120 GGCRKNKRVK RPGSTSSTSS AMDGGATSSS SSVPSTTAAA NNNTNPNSHP SHIDQINPLF 180 YGLSSNPFMD TASGFDLHQL NHHAQLGLGF SSSSGTNMMS SDNYRNRFNP ASSSSLPSNY 240 SSMFSTSPST TVPTMASVLA SKFINGGAFK DIQARGPHQQ NQYFQSLLPF EDLQIAAGNN 300 GEAGGAVKDV KVEDHNGQNR LQWNNNNGSS HVNGNMNCQN QISEQMGLSD PTPYWNSSTL 360 GSNWHDPANL GSSVSSLI*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MLSNCDHEKM ALLISSTTNE WPQLQQDIQI DDIHHQKGLN NNNNNVRSSS TSSPANRIME  60
KPGQEQLQLQ QQALKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG  120
GGCRKNKRVK RPGSTSSTSS AMDGGATSSS SSVPSTTAAA NNNTNPNSHP SHIDQINPLF  180
YGLSSNPFMD TASGFDLHQL NHHAQLGLGF SSSSGTNMMS SDNYRNRFNP ASSSSLPSNY  240
SSMFSTSPST TVPTMASVLA SKFINGGAFK DIQARGPHQQ NQYFQSLLPF EDLQIAAGNN  300
GEAGGAVKDV KVEDHNGQNR LQWNNNNGSS HVNGNMNCQN QISEQMGLSD PTPYWNSSTL  360
GSNWHDPANL GSSVSSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000385.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009342005.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A498K1E5	0.0	A0A498K1E5_MALDO; Uncharacterized protein
STRING	XP_009342005.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-34	Dof family protein