PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000388.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 118aa    MW: 12930.4 Da    PI: 5.2777
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000388.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP71.61.4e-2270117148
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                  +C+v++C+adls++k+y+rrhkvC+vh+kap+vl+ g  qrfCqqCsr
  Pbr000388.1  70 CCKVDSCNADLSDLKQYYRRHKVCDVHAKAPAVLMGGFLQRFCQQCSR 117
                  6**********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-2364117IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.75168117IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-2169117IPR004333Transcription factor, SBP-box
PfamPF031104.3E-1871117IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEPGRAHGKK TLVKYEEEEE EEEEEESRSG TPSIVDGEDE RRDTVMMMNS TAPSPTGRRS  60
GAGGSTAGPC CKVDSCNADL SDLKQYYRRH KVCDVHAKAP AVLMGGFLQR FCQQCSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A8e-2067117252squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000388.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738521e-153KF673852.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342532.11e-82PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387401e-20SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLA0A498JUM12e-63A0A498JUM1_MALDO; Uncharacterized protein
STRINGXP_009342532.14e-82(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.16e-21squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]