PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000394.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 841aa    MW: 93367.8 Da    PI: 4.8542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000394.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-08261281526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+f+a+ G+C +G++CkF H+
  Pbr000394.1 261 ICDFHAK-GWCIRGSSCKFVHV 281
                  69*9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.84E-5256280IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6261281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859261283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MTSALPVPEL PCVPWPAEIS EAHSLSVPAK LHTKSHRTNV YSHALRMPHS GDDQFLEPAE  60
CSDSDIEEEE EDPELLEEEV EEEEEEEQEA EAEEEEEEQE AEAEEEEEAA EAEENMEDEA  120
EGRVEVDMDI SDSPIRAHDH QNDDYVVVNK DAGILSGQRT SVDLRDDGNS HVCNSEIMDA  180
KAASSCRVGG EEMADAIPMR DNLGKEVRGV VSPEDGMKKV DMRQRNDRKQ MDSRSGAFEI  240
GTTITSPAVE TSDRNKHPAI ICDFHAKGWC IRGSSCKFVH VKDNPVSSQP QPEGDIANST  300
REVQLDEGLR DITERSRSPG FREPLSSSSG SDFAFSSHLT SEKIRFLEHI GRQHQFHEKR  360
KFPTVIEEES NVGESTVAKK LHSSKDDPGF LSSLKDIERD DQTRNWLSDK DKSIFMSGLH  420
PEPGFFSNGS ISSSGKYFIR KTSSHTSGMG EPDGIWSQHV HRVHSSPLVN LALNSSSRNL  480
STTGLFPTSR ISSWTGFSLP SSSSNLDASP HDTLKLFDRS RDYRSCTRLP PLLKSSSPFS  540
SSELKSFPVT SVSLCTAEIK TKISTNDWEP SVPFRPSFIL PHAFLSSSGR QYDPLRDSIE  600
LPKLANISGE TSFYPEGATA VNKLHQQIHG ESASGTTRTG CDGDTNSMSS HNTYHEKVLD  660
NSCYIRDHNS PGTEAETLGT NAVCQKGTMT GEENPLGPSH LKGSTKQNKA STAYGDSGHE  720
SDCSRHQEDI KVDRFRDKNE VDGEHLTDGN VQQESKAVRN FRAALVDLVK DMLKPKWRDG  780
SLSKDAHNMI VKRAVEKIIS AFQPHQIPPT IETVMHYLSV CRPKISKLVE VSLFFFFNFW  840
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000394.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342631.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like
TrEMBLA0A498JVG80.0A0A498JVG8_MALDO; Uncharacterized protein
STRINGXP_009342631.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-37C3H family protein