PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000434.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 326aa    MW: 36142.1 Da    PI: 7.728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000434.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.86.4e-3216114199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaC+++r++C++dCv+apyf +++ ++f++vhk+FG+sn++kllk+l++++ r +a++s ++eA ++ +dPv+G +g+++kl+ + e l++ l++ 
  Pbr000434.1  16 ACAACRHQRKRCEDDCVMAPYFTNKD-EDFKAVHKIFGVSNMTKLLKQLDDQNhRGTAVQSFMWEAYMWKQDPVNGPLGMYRKLEIENELLRNALNEE 112
                  7********************98776.99********************77766***********************************999999987 PP

       DUF260  98 ke 99 
                  ++
  Pbr000434.1 113 QK 114
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.75215116IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3016112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGSSSSSGEL IAGRHACAAC RHQRKRCEDD CVMAPYFTNK DEDFKAVHKI FGVSNMTKLL  60
KQLDDQNHRG TAVQSFMWEA YMWKQDPVNG PLGMYRKLEI ENELLRNALN EEQKALNYGY  120
ANQSLAIDGS SNGTYTKLLQ GQEATEMSQE QQALGQGRGF HHGAASAKQQ ARDQQGVVGL  180
DSSAGQFGMV GLISTPKLQS QRPMQFEGRP NIGPHMYGLG RGQVVFDPSV GQEQQRALGS  240
ARAAQIGPHF GDFSLLGHTR SAITQSLYSP YHHQQPHHPV HAQRQVMNQG QNHPNFQQYS  300
SLNNCHNYDN VQDGEQFNQG KSERP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-151711112118LOB family transfactor Ramosa2.1
5ly0_B6e-151711112118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000434.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352961.11e-154PREDICTED: LOB domain-containing protein 30-like
TrEMBLA0A498JVM60.0A0A498JVM6_MALDO; Uncharacterized protein
STRINGXP_009353158.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.16e-22LOB domain-containing protein 2