PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000436.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 264aa    MW: 29637.2 Da    PI: 5.8214
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000436.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19125175255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrd    + k +r++lg+f+tae+Aa a+++a+++++g
  Pbr000436.1 125 HYRGVRRRP-WGKYAAEIRDsT--R-KGARVWLGTFDTAEDAALAYDKAALRIRG 175
                  8********.**********32..2.24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-32124184IPR001471AP2/ERF domain
CDDcd000181.15E-29124183No hitNo description
PfamPF008474.9E-14125175IPR001471AP2/ERF domain
PROSITE profilePS5103223.696125183IPR001471AP2/ERF domain
SMARTSM003801.9E-38125189IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-23125185IPR016177DNA-binding domain
PRINTSPR003674.3E-11126137IPR001471AP2/ERF domain
PRINTSPR003674.3E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MTVHCDIPAE KPASEAIQLE DVWASFIGVN GVKREAKSAT ESQSWEDMPP LDGREGSMEV  60
LQRLPSLGRW ISMGTEAWEK LLDSGVAPAQ NSEQSCKDRL EGNGAANSEC EAKVERAKKV  120
EFTKHYRGVR RRPWGKYAAE IRDSTRKGAR VWLGTFDTAE DAALAYDKAA LRIRGSKAHL  180
NFPLETVAKA MGLDCFNIYS STNIGSNPRR RRLRDWEENV EERKPAEKRK ASMQKMLGDH  240
DEFDVFEFQD LGSDYLDSLL SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-29124186466ATERF1
3gcc_A2e-29124186466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000436.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5065820.0KM506582.1 Eriobotrya japonica transcription factor ERF16 (ERF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346221.10.0PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0H3YCD21e-151A0A0H3YCD2_9ROSA; Transcription factor ERF16
STRINGXP_009346221.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-33ERF family protein