PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000450.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 218aa    MW: 24568.2 Da    PI: 7.3005
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000450.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.13.2e-34341443110
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssgkaaksaa.ks 97 
                  ++kd+hsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d+++k+i+WL++++k ai +l +++++ +  ++c++ +   ++ ++++g+++  +  ++
  Pbr000450.1  34 ARKDQHSKVYTSKGPRDRRFRLSAHTAIQFYDVQDRLGYDRPGKAINWLIEKSKSAIEALSKSEQPCQeyNDCTNTNVFGQQTEQEIGEQSMHQFwNH 131
                  79*************************************************************88877778885555555555555554443333333 PP

          TCP  98 kksqksaasalnl 110
                   +s+ + ++++n+
  Pbr000450.1 132 PESNGELETMSNV 144
                  3333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.13593IPR017887Transcription factor TCP subgroup
PfamPF036349.9E-3135127IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MPTSKSAFKQ PRVDNARYGK IVKVHGGHIV RSLARKDQHS KVYTSKGPRD RRFRLSAHTA  60
IQFYDVQDRL GYDRPGKAIN WLIEKSKSAI EALSKSEQPC QEYNDCTNTN VFGQQTEQEI  120
GEQSMHQFWN HPESNGELET MSNVSPMNNV NNLKEPVFDP HQLSSLNYAE GALDSASSLS  180
DSKFKEMGWF QSLVAWNYNA NDGGEICPYN SSHVSLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-204093154Putative transcription factor PCF6
5zkt_B9e-204093154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000450.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353196.11e-165PREDICTED: transcription factor TCP5-like
TrEMBLA0A498ISM71e-137A0A498ISM7_MALDO; Uncharacterized protein
STRINGXP_009353196.11e-164(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148631014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.13e-38TCP domain protein 10