PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000501.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 353aa MW: 40104.5 Da PI: 6.8371

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000501.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.1	6.2e-16	59	89	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++AtPk il+lm+v gL+++hvkSHLQ+YR+ Pbr000501.1 59 DRATPKLILQLMNVRGLSISHVKSHLQMYRS 89 89****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.31E-5	58	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-11	58	91	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.9E-14	59	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDELEFGDQE AEKSNEISEE QVENGSVGSS QKCSSFDLNE EASSDSEERG QGNNAAYNDR 60 ATPKLILQLM NVRGLSISHV KSHLQMYRSK KLDGNGQVLS EKHESKRGRD NISCMVHQTI 120 NQPCRNVYFG MDNGGIVVTT NPHDCQSQPQ PDFKAVSRSC SLRNQELVHG NNSNNSMGKI 180 LQTVPINPSR FLEDKRWPPS ETINQQQWRA KRIPAAKISW SDDCNGSQSD HLMHHMHTTP 240 RLIRESHNIR PPNWNLGESR NTRQFPSNSH NSITNSSCYK TEFEPPFGFE LNEEKISKYK 300 EWMPQLELGL SQSVENYEEK KIISRHRMVG EELYGTGQRV KQEISTKLSL SL*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDELEFGDQE AEKSNEISEE QVENGSVGSS QKCSSFDLNE EASSDSEERG QGNNAAYNDR  60
ATPKLILQLM NVRGLSISHV KSHLQMYRSK KLDGNGQVLS EKHESKRGRD NISCMVHQTI  120
NQPCRNVYFG MDNGGIVVTT NPHDCQSQPQ PDFKAVSRSC SLRNQELVHG NNSNNSMGKI  180
LQTVPINPSR FLEDKRWPPS ETINQQQWRA KRIPAAKISW SDDCNGSQSD HLMHHMHTTP  240
RLIRESHNIR PPNWNLGESR NTRQFPSNSH NSITNSSCYK TEFEPPFGFE LNEEKISKYK  300
EWMPQLELGL SQSVENYEEK KIISRHRMVG EELYGTGQRV KQEISTKLSL SL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000501.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009350428.1	0.0	PREDICTED: myb-related protein 1-like
TrEMBL	A0A498JUD0	0.0	A0A498JUD0_MALDO; Uncharacterized protein
STRING	XP_009350428.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-14	G2-like family protein