PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000556.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 27948.6 Da    PI: 9.8855
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000556.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.92e-312574150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Pbr000556.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                 79***********************************************8 PP
2K-box112.44.4e-37921894100
        K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ss++  ++ea ++++qqe+akL+++i nLq+ +R+++G+ L+s+ +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e
  Pbr000556.1  92 SSNTGlVSEASTQYYQQEAAKLRAQIGNLQNANRNMMGDALSSMPIKDLKSLESKLEKGISRIRSKKNELLFAEIEYMQKRELDLHSNNQLLRAKIAE 189
                  45556799***************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6131777IPR002100Transcription factor, MADS-box
SMARTSM004327.1E-411776IPR002100Transcription factor, MADS-box
CDDcd002655.60E-451894No hitNo description
SuperFamilySSF554552.09E-331890IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003191.2E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-335475IPR002100Transcription factor, MADS-box
PfamPF014863.8E-27101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.559103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MANENKSLSI DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSVKE TVERYRKACA DSSNTGLVSE ASTQYYQQEA AKLRAQIGNL  120
QNANRNMMGD ALSSMPIKDL KSLESKLEKG ISRIRSKKNE LLFAEIEYMQ KRELDLHSNN  180
QLLRAKIAEN ERGQQNINVM AGGGPSSYDI LQSQPYDSRN YFQVNALQPN HQYNPRHDQI  240
SLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q3e-201785169Myocyte-specific enhancer factor 2B
1tqe_R3e-201785169Myocyte-specific enhancer factor 2B
1tqe_S3e-201785169Myocyte-specific enhancer factor 2B
6c9l_A3e-201785169Myocyte-specific enhancer factor 2B
6c9l_B3e-201785169Myocyte-specific enhancer factor 2B
6c9l_C3e-201785169Myocyte-specific enhancer factor 2B
6c9l_D3e-201785169Myocyte-specific enhancer factor 2B
6c9l_E3e-201785169Myocyte-specific enhancer factor 2B
6c9l_F3e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000556.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640090.0KP164009.1 Pyrus pyrifolia clone PpAG-4 AG MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351902.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_009351910.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_009351917.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X3
RefseqXP_018502014.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ401681e-126AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLA0A0D4ZXV31e-179A0A0D4ZXV3_PYRPY; AG MADS-box protein
STRINGXP_009351902.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-113MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]