PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000749.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 331aa    MW: 34814.3 Da    PI: 6.2242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000749.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-1746101148
                      TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEdell++++k+ G g          W++Ia +++ gRt++++k++w+++l
      Pbr000749.2  46 RGPWTPEEDELLANYIKKEGEGrwrtlpkqaGWSLIAGRIP-GRTDNEIKNYWNTHL 101
                      89********************9999999999999999999.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-2137108IPR009057Homeodomain-like
SuperFamilySSF466892.01E-1540111IPR009057Homeodomain-like
PROSITE profilePS5129420.81641105IPR017930Myb domain
SMARTSM007172.4E-1445103IPR001005SANT/Myb domain
PfamPF002491.7E-1546101IPR001005SANT/Myb domain
CDDcd001675.98E-1448101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRNPPSSSKA TAAASATMTT ASTSSSKAGI AGGSKTPCCV KVGLKRGPWT PEEDELLANY  60
IKKEGEGRWR TLPKQAGWSL IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP  120
DHHSAAADAD VDNTNKLVAA AASFKANTRF SNPNPSPPPS DRLVHQGADP SINGNDGNIA  180
IDHDLGTIVH SCANLITSIN NPDASSSAAA MGTSSLRTNN NSQAGVLLGG GGNEEDEDIN  240
CCADDVFSSF LNSLINEDPF AVQHQLQQQV LHNGNVSTHA AGAGSDHVPL ISMTSASTMV  300
PSTFGWDSAV LMSSAFIQND HQRVTDQTEQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000749.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2364440.0KT236444.1 Pyrus sinkiangensis MYB gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375794.10.0PREDICTED: transcription repressor MYB5-like
TrEMBLA0A0S2GYH00.0A0A0S2GYH0_9ROSA; MYB
STRINGXP_009375794.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-40myb domain protein 5