PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000853.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 218aa    MW: 23313.8 Da    PI: 5.6675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000853.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-13164209655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  Pbr000853.1 164 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKFLQ 209
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.37E-12162213No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15163215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-10164209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MQRAAGGSSG GEVSRGGGGL GRFASPPATW LEALLEEDEE DPLKPTQCLT ELLADNTPCT  60
TVDPALYEAA DGYLSRQHSS PADFNGGGGG SGGYFSGFGI PGHLDLASSS SLSPNSSSSS  120
ANKRVREQHQ FSSDSHVKVE EGGLEDSVSC RVRAKRGCAT HPRSIAERVR RTRISDRIRK  180
LQELVPNMDK QTNTADMLDE AVEYVKFLQK QIQVLFL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362436.11e-157PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P84e-62BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A498HW051e-101A0A498HW05_MALDO; Uncharacterized protein
STRINGXP_009362436.11e-156(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.12e-37bHLH family protein