PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000976.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 258aa MW: 30045.5 Da PI: 5.6074

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000976.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.3e-26	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++ GF+vr++++++s+ n++i+ ++fvCskeg+r+++ +++++ + ++tr gC+a++++ +++ kw+vtk+++eHnH+l+ Pbr000976.1 77 EFYVAYGRRSGFTVRIHHNRRSRVNNQIIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPVTREGCQAMIRLAQRDGPKWVVTKFVKEHNHKLM 167 6****************************************99883332.245899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-24	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDHQSIHGFD SDESDLDMHA ETYEHNEGIE DVLPENLDLC VDEKEETEEQ SADLPMNVEA 60 LEPYIGMEFN SRDEAREFYV AYGRRSGFTV RIHHNRRSRV NNQIIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPVTREGCQ AMIRLAQRDG PKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LASEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQINMIL KDLEKHTEHM SKKVSDTVQS 240 IKEIEEEQSE DSDSGWS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000976.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347669.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	M5XFI8	1e-178	M5XFI8_PRUPE; Uncharacterized protein
STRING	XP_009347669.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-39	FAR1 family protein