PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000977.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 200aa    MW: 22325.5 Da    PI: 8.318
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000977.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-1742124290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  fY++YAk+vGF +r+ +s+ks+r+g+i++r + C    +++++        +++  ++  C a++ +k+e  g+w+++k+  +HnH l+
  Pbr000977.1  42 FYDDYAKRVGFVTRVLSSRKSERDGSIISRGLGCRGISENRRKV------MQKECGEQEVCPAMVLLKQEMPGRWVIKKFLGDHNHLLV 124
                  9*********************************7655555544......4578888999**************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1442124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDDLNGTVET STGGESNNIE AGPCQEPYEG MLFESEEAAK VFYDDYAKRV GFVTRVLSSR  60
KSERDGSIIS RGLGCRGISE NRRKVMQKEC GEQEVCPAMV LLKQEMPGRW VIKKFLGDHN  120
HLLVIQSPKI RKTLDEKDKK IQELSAELRV KKRLSAAYRD QLLAFIKDIE DHNAHLSTKV  180
QSVSNKIKEL EAKAGALTG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000977.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347677.11e-147PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A498JY171e-121A0A498JY17_MALDO; Uncharacterized protein
STRINGXP_009347677.11e-146(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-56FAR1 family protein