PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001143.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 144aa    MW: 16207.2 Da    PI: 7.7923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001143.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-062446123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++Cg+ F ++  L  H++ H
  Pbr001143.1 24 FECHYCGRKFESSQALGGHQNAH 46
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-72052No hitNo description
Gene3DG3DSA:3.30.160.601.9E-42150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.4452451IPR007087Zinc finger, C2H2
PfamPF139121.3E-62448IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKLFGFSVTD DSDQVAMIIE SKKFECHYCG RKFESSQALG GHQNAHKRER QLERMAMLEH  60
VQHLRHPPPN HDHRDQNQLV AASVPISVYS SASTSNINGD HAGVARVPSV VAPRNPHDPY  120
FKRIEQVVPI TDEGNYVDLR LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001143.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347778.11e-104PREDICTED: zinc finger protein GIS2-like
RefseqXP_009370007.11e-104PREDICTED: zinc finger protein GIS2-like
TrEMBLA0A498HLW84e-77A0A498HLW8_MALDO; Uncharacterized protein
STRINGXP_009347778.11e-103(Pyrus x bretschneideri)
STRINGXP_009370007.11e-103(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.14e-16C2H2 family protein