PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001171.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Nin-like
Protein Properties Length: 908aa    MW: 101513 Da    PI: 6.3352
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001171.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.18.6e-29590641152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+i+l++l+kyFs+++kdAAk++gvc T+LKriCRq+GIkRWP+Rkik++
  Pbr001171.1 590 AEKDINLQVLRKYFSGSLKDAAKSIGVCSTTLKRICRQHGIKRWPSRKIKKV 641
                  589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.382580661IPR003035RWP-RK domain
PfamPF020421.4E-24594641IPR003035RWP-RK domain
SMARTSM006667.1E-27812895IPR000270PB1 domain
PROSITE profilePS5174527.739812895IPR000270PB1 domain
SuperFamilySSF542771.2E-23813898No hitNo description
PfamPF005646.2E-21814893IPR000270PB1 domain
CDDcd064071.42E-42814893No hitNo description
Gene3DG3DSA:3.10.20.2406.6E-24814892No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MDDGVLSPAT MLGAQPDSAM DLDFMDELFL EGCWLEARDG PEFPNQSLPN TPLNPSFIWH  60
TLETNGNMSM NPYQNSNQEE MQTPFFKQLE EGPANPQSPC QNMIEDVVAY SGQSEDPTIG  120
RELSTRWWIG PTGNDGSASS VTQRLMTALT YIREVMRNKD VLVQVWVPVN RGGRDVLTTN  180
ELFCLDPSCS RLAKYRDISV NYQFSTGEDS TEMVKGLPGR VFSGKVPEWT PDARYFTSDE  240
YPRVRHAQQY DVSGTLALPI FEQGSRTCLG VIEVVTTDRK ISYQPDIDGI CKALEAVDLR  300
SSRNLSTENV KGCDKPYHAA LPEIQEILRS ACETHKLPLA QTWVSCIEQG KDGCRHSDDN  360
YIHCVSTVDH ACHVADPYIQ GFHEACSEHH LLRGQGIVGR AFMTNQPCFS DDMTSFFKTE  420
YPLSHHARMF NLHAAVAIRL RSTDIGSTDF VLEFFLPLEC RDPKEQKKML NSLSLIIQQT  480
CRSLRVVTDK EVEEETKFHV SEVIVPSDPG PSNVACFTEV QQNGNAVSMF PNKKQRKVLS  540
VKLSKLRQHQ EDSNLKSAEC GEEFSVLGEG EVSFSTVGAS KTREKRRAKA EKDINLQVLR  600
KYFSGSLKDA AKSIGVCSTT LKRICRQHGI KRWPSRKIKK VGHSLRKLQL VIDSVEGASG  660
AFQINSFYTN FPELTSPNLS GTSPFSNSKL SDQPNQTNLS PEGGVFSPQA TASKSPPSSC  720
SQNSSSSQCC SSKTQQHPFS CNVAGNDDPV GDNSRDGVLK RVRSEAGLHD FGQDRTELLP  780
RSQSQKILCE QQNLQSIPPS LKNNGRVTQV EVQRVKVAYG DEKTRFRMQS NWRYEDLVQQ  840
IAKRFSIQDM SNFDIKYLDD DSEWVLLTCD DDLEECVDVC RSSQSHTIKL SLQISRHHLK  900
GLIGRPS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362861.10.0PREDICTED: protein NLP5-like
RefseqXP_009362862.10.0PREDICTED: protein NLP5-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A498HI360.0A0A498HI36_MALDO; Uncharacterized protein
STRINGXP_009362861.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein