PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001239.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 335aa    MW: 37380.8 Da    PI: 6.0113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001239.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.1e-22162222259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dD ++WrKYGqK+++++++pr+Y+rCt++    C+++k+v++ ++ p v+ +tY g+H+++
  Pbr001239.1 162 DDSHAWRKYGQKVIHNAKHPRNYFRCTHKydqACKATKQVQQVQDHPPVFRTTYYGTHTCR 222
                  8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-23155222IPR003657WRKY domain
PROSITE profilePS5081118.67156219IPR003657WRKY domain
SuperFamilySSF1182903.4E-22159222IPR003657WRKY domain
SMARTSM007749.8E-33161223IPR003657WRKY domain
PfamPF031068.6E-23162222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEWSWPESVL SNGERVVEEL IQGRELASQL SKAFANRSLV VNGDDGGSAE GIVNKILGSF  60
VNTLLIINGK ESDQEFVSDQ IQGNSSGVNG GSTGVSDGGR GGGYSSSWDA NHDHAANIKS  120
EDYNEEEISC KSTSTFKDRR GSYKRRKASH SWTRDTPASN IDDSHAWRKY GQKVIHNAKH  180
PRNYFRCTHK YDQACKATKQ VQQVQDHPPV FRTTYYGTHT CRDYPKASEL VLDCTSPRDS  240
SKFISFDNAN CLENKQEHPF FTSFASSSVK EELIVKATSD HTVTSHNNHS SPSDYLLSHD  300
DLMAFDSFWP MSEFSSSIDQ YDRDDVFLKM IAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-24158222569OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001239.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347811.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A498IJ510.0A0A498IJ51_MALDO; Uncharacterized protein
STRINGXP_008388370.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-32WRKY DNA-binding protein 70