PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001328.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25473.8 Da    PI: 6.675
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001328.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.7e-174894349
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ie      v+fskRr g++ KA  LS LC+aevavi+fs+ g+ly +
  Pbr001328.1 48 IEKPNSLLVSFSKRRGGLFRKACQLSGLCGAEVAVIVFSPCGRLYVF 94
                 555566679************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.4513898IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-203897IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-154060IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-2141111IPR002100Transcription factor, MADS-box
PfamPF003191.6E-194794IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-156075IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-157596IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPGIISTALX XXXXXXXXXX XXXXXXXXXX XALPNKKSVQ RKLVIKKIEK PNSLLVSFSK  60
RRGGLFRKAC QLSGLCGAEV AVIVFSPCGR LYVFGHPSAD SVLSRLERVN NALHGRQYIS  120
MHASSEDEDH DTDSSINESN SIESCMVSKT SIDLENLVLD LEKDTEEMEE DEASKFWWDQ  180
PIETVKKLDE LKQFKSSLDK LKAKVITQLD EMEMRKLVVR HYLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001328.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362796.11e-136PREDICTED: agamous-like MADS-box protein AGL62, partial
TrEMBLA0A498IGR72e-74A0A498IGR7_MALDO; Uncharacterized protein
STRINGXP_009362796.11e-135(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-21AGAMOUS-like 62