PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001361.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 235aa    MW: 26587.6 Da    PI: 5.7173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001361.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-17132182255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     k +r++lg+f t  +Aaka++ a+ kl+g
  Pbr001361.1 132 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFETDVDAAKAYDCAAFKLRG 182
                  7********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-31131191IPR001471AP2/ERF domain
PROSITE profilePS5103224.46132190IPR001471AP2/ERF domain
CDDcd000181.05E-29132190No hitNo description
SMARTSM003802.7E-35132196IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22132191IPR016177DNA-binding domain
PfamPF008475.9E-12132182IPR001471AP2/ERF domain
PRINTSPR003673.5E-13133144IPR001471AP2/ERF domain
PRINTSPR003673.5E-13172192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSTHEEQDYS TLELIRQHLL EDFTFTDSFI SHLNFEITPD DISYFEFQPI KPEYSSLSES  60
GSSSPMSTPN YHSPQLSNSE TKPESVNLPS MEVESLNLSS QCSPKRKNST CQTSSSKDEL  120
QQVSGSGDVL RHYRGVRRRP WGKYAAEIRD PARKGTRVWL GTFETDVDAA KAYDCAAFKL  180
RGRKAILNFP LEAGLSEPPL NMARKRRRSV KQEEVTKTEE LELQSWVLWE GQGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28131191161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-28131197470ATERF1
3gcc_A1e-28131197470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203207RKRRR
2203208RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001361.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324430.0GU732443.1 Malus x domestica AP2 domain class transcription factor (AP2D19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362711.11e-174PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLA0A4D5XFE71e-174A0A4D5XFE7_9ROSA; Ethylene Responsive Factor ERF106
STRINGXP_009362711.11e-174(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.17e-48ERF family protein