PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001362.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 323aa    MW: 35727.8 Da    PI: 7.3684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001362.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19155205255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka++ a+ kl+g
  Pbr001362.1 155 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDFAAFKLRG 205
                  7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31154214IPR001471AP2/ERF domain
CDDcd000186.36E-30155213No hitNo description
PfamPF008472.1E-13155205IPR001471AP2/ERF domain
PROSITE profilePS5103224.658155213IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22155214IPR016177DNA-binding domain
SMARTSM003801.0E-36155219IPR001471AP2/ERF domain
PRINTSPR003672.3E-10156167IPR001471AP2/ERF domain
PRINTSPR003672.3E-10179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MASEDSSALE LIRQHLLNEF TTVDSFITSL NLCTSHIPQQ HEITQSPFNT TSSSSPSSSS  60
SSSTITTSTT NSGSESTDQY FKISDYLVPE IDRDTRFETK PQISHPKPPK HSTLSHRKPA  120
INVAIPSPPP LSSSSGDENQ NTSNTSTVIE AAARHYRGVR RRPWGKYAAE IRDPNKRGSR  180
VWLGTFDTAI EAAKAYDFAA FKLRGSKAIL NFPLEAGRSE ELSADHPLLV SRKRRRERST  240
ESHESSGEMI RNKEIKKEED VQDIKIPAQE RVSTAVCPLT PSSWTAVWDL SKENELGIFS  300
VPPLSPLSPH PNFMGYSQLM VT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-29151220170ATERF1
3gcc_A4e-29151220170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324830.0GU732483.1 Malus x domestica AP2 domain class transcription factor (AP2D60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362712.10.0PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLD5L1430.0D5L143_MALDO; AP2 domain class transcription factor
STRINGXP_009362712.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-53ERF family protein