PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001365.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 350aa    MW: 38106.9 Da    PI: 10.2547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001365.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14100144347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
      Pbr001365.1 100 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 144
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129421.43593149IPR017930Myb domain
SuperFamilySSF466893.73E-1795148IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-1896148IPR006447Myb domain, plants
SMARTSM007171.5E-1197147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1297143IPR009057Homeodomain-like
PfamPF002492.3E-11100144IPR001005SANT/Myb domain
CDDcd001676.11E-10100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVKESARKCS HCGHNGHNSR TCNHSHVNKG VCLKLFGVNI LENQEDSIKK SYSMGNLHTD  60
GNGDHNNNAV GADHDPGYLS DGLIHNKRHK AAHERKKGRP WTEEEHRVFL AGLKKLGKGD  120
WRGIARNFVT TRTPTQVASH AQKYFLRQAT NDKRKRRSSL FDMHFKELYD QGPQDSSVTP  180
TKSAAETSPQ ASSSKTRQLK INTGNNSPPA SNVPTQILDR FPHLCLDSPP APPLSPICTL  240
PNYPAMPFMM GIPGNVSYAP MMHFYRPSYH HMIKNHGNFP TSAPVISHPS GIPSSPRSLP  300
SSPSMAAGRI SSMTSAAEKD ALELKIGQPQ PSQGANLSPS SSSGAIKVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001365.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362715.10.0PREDICTED: myb-like protein J
TrEMBLA0A498KKE50.0A0A498KKE5_MALDO; Uncharacterized protein
STRINGXP_009362715.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-68MYB_related family protein