PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001724.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 343aa    MW: 37562.4 Da    PI: 6.1875
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001724.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.31.8e-34170227259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp++v++tYeg+H+h+
  Pbr001724.1 170 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFDDPSIVVTTYEGQHTHP 227
                  8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381305.2E-10817342IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.802.5E-35154229IPR003657WRKY domain
SuperFamilySSF1182908.5E-30161229IPR003657WRKY domain
PROSITE profilePS5081131.915164229IPR003657WRKY domain
SMARTSM007742.3E-41169228IPR003657WRKY domain
PfamPF031063.5E-27170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDVGKREDNN INGGGGCGFS TSPFAGMFDF CEGEKSSSLG FMELLGVGVG QDYCPTSLFD  60
YLPQTPSTVL PSLVSTMGGK DQLSADYSSL NQQPATPNSS SISSESSEAV NEEHTDHKAA  120
ADQEENNEEE EEHDEQKKTK KELKGKKASQ KRQREPRFAF MTKSEVDHLE DGYRWRKYGQ  180
KAVKNSPFPR SYYRCTSASC NVKKRVERSF DDPSIVVTTY EGQHTHPSPL LPRPTHTSAS  240
ASPFAPNNFA MPLIPTRTLF PHHYQQVEPF ADNSSPPSSA PFNFGNYHVN GSSSSLTNAT  300
STTAGLVHPE RRFCSPATGS ALLADHGLLQ DIVPSHMLKQ EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-27159229777Probable WRKY transcription factor 4
2lex_A5e-27159229777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001724.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129110.0JX112911.1 Malus hupehensis WRKY transcription factor 23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363128.10.0PREDICTED: probable WRKY transcription factor 23
TrEMBLA0A498JBK50.0A0A498JBK5_MALDO; Uncharacterized protein
STRINGXP_009363128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-59WRKY DNA-binding protein 23