PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001951.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 159aa    MW: 17700.4 Da    PI: 5.9159
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001951.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.6e-1016402348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia +++ gRt++q+k++w+++l
      Pbr001951.1 16 RWSLIAGRVP-GRTDNQVKNHWNSHL 40
                     5*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.208144IPR017930Myb domain
SuperFamilySSF466891.01E-81545IPR009057Homeodomain-like
CDDcd001672.32E-71640No hitNo description
Gene3DG3DSA:1.10.10.602.2E-111640IPR009057Homeodomain-like
PfamPF002497.8E-81640IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MNEFAYVEPS HWVLFRWSLI AGRVPGRTDN QVKNHWNSHL SKKLGVNSKR GKTKAKTYSD  60
SKRAKNNFCT PSSESNSELQ PLPNSDSNSN ISGDHEAAAA IDGFDEEMMN IQDHIGSKSE  120
VGFSGMSEAT MMSNDYSFWF HNDDLNPYDP LFIGPYSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001951.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363028.11e-102PREDICTED: transcription factor WER-like
TrEMBLA0A498I6261e-88A0A498I626_MALDO; Uncharacterized protein
STRINGXP_009363028.11e-101(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.19e-16myb domain protein 66