PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr002005.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 241aa MW: 26669.8 Da PI: 9.3258

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr002005.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48	2.1e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ ++++q+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ Pbr002005.1 28 RSRWIPKPQQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	103.7	1.3e-33	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+p+Qi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Pbr002005.1 27 VRSRWIPKPQQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-8	7	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.078	24	89	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.24E-13	24	95	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-5	26	93	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEDHLQGQDP NDSSPTNGST ERSPEPVRSR WIPKPQQILI LESIFNSGMV NPPKEETVRI 60 RKLLEKFGSV GDANVFYWFQ NRRSRSRRRQ RQLQASLEQR TNNNINNNQM ASLSQHQVGG 120 AIQYGESCGF PTAAPPLAFG ASPNNFLVGS SSSSCGQHLI ADHDVHHSID CVGDQFFSVS 180 GQMGFPEIEQ SSGVTSVLGG GPSDTSNLHL QSVFSTRFQI TLKKTLQRNS VNLFRKLKWI 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr002005.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009348254.1	1e-156	PREDICTED: WUSCHEL-related homeobox 11-like
TrEMBL	A0A498ID78	1e-138	A0A498ID78_MALDO; Uncharacterized protein
STRING	XP_009348254.1	1e-155	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-33	WUSCHEL related homeobox 11