PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002023.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 1237aa    MW: 139147 Da    PI: 8.6373
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002023.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-129481004155
          AP2    1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                   s y+GV++++++gr++A+++d  ++n+ ++k    g ++ +e Aa+a++ a++k++g
  Pbr002023.1  948 SIYRGVTRHRWTGRYEAYLWDkGTWNQnQNKEGKQGAYDDEEAAARAYDLAALKYWG 1004
                   57*******************88887777877777********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5137510.205144178IPR002885Pentatricopeptide repeat
PfamPF130414.7E-10147189IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.9E-8147180IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.0E-15157416IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484521.9E-6178349IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.457179213IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0013182209IPR002885Pentatricopeptide repeat
PfamPF130414.0E-10214260IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.211214248IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-8217249IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.58249283IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.4E-4251285IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.67E-6283315IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.767284318IPR002885Pentatricopeptide repeat
PfamPF015352.5E-4287314IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-6287314IPR002885Pentatricopeptide repeat
PfamPF138128.4E-10315367IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.81321355IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.518356390IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.0E-8358392IPR002885Pentatricopeptide repeat
PfamPF138121.8E-15378440IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.67E-6389569IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137512.726391425IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-8393426IPR002885Pentatricopeptide repeat
PROSITE profilePS5137513.537426460IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-9427580IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007561.7E-9428462IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.226461495IPR002885Pentatricopeptide repeat
PfamPF130415.7E-16496544IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.257496530IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.1E-7499532IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.564531565IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.9E-7533565IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.81599633IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.5E-9614660IPR011990Tetratricopeptide-like helical domain
PfamPF130416.2E-12633681IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.74634668IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-8636670IPR002885Pentatricopeptide repeat
SuperFamilySSF484529.67E-6638658IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.859669703IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.182739769IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.778774808IPR002885Pentatricopeptide repeat
PfamPF008471.2E-79481004IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-149481013IPR016177DNA-binding domain
SMARTSM003804.3E-169491018IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-109491013IPR001471AP2/ERF domain
PROSITE profilePS5103217.829491012IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1237 aa     Download sequence    Send to blast
MGTVSRPPFF NPTRPKNQIV CGKPNNGDSS AFQEKKQVSV DYDHGTHHLS TRITGLTKQH  60
IPKRHRLRVE TERFQKDWAV SDVVDRLYKL RHWEDIEGLL NRWVGRFARK NFPVLIKEMT  120
ERGSVEHCVR VFGWMKNQKN YCARTDMYNM MIRLHARHNL VDKARGLFFE MQEWRCKPDA  180
ESYNALINAH GRAGQWRWAM NLMDDTLRAA IPPSRSTYNN LINACGSSGN WREALKVCKK  240
MTDNGVGPDL VTHNIVLSAY KTGAQYSKAL SYFELMKGTN IRPDTTTLNI VIYCLVKLGQ  300
YEKAIDIFSS MRDKRAECRP DIVTFTSIIH LYSMSGQIEN CTTVFSTILA EGLKPNIVSY  360
NALLGAYASH GMSEEALSVF NEIKKSSFRP DVVSYTSLLN SYGRSQQPQK AREVFDMMKR  420
NNLKPNLVSY NALINAYGSN GLLAEAVEVL REMERDGIHP NIVSICTLLA ACGQCGQKVK  480
IDAVLSAAKL RGIELNTIAY NSAIGSYMNL GEHEKAINLY QSMRKKKVKP DSVTYTVLIS  540
GCCKISKHSE ALTFFDEMVD LKIPVSKEVY SSVISAYSKM ASFCLAKVTP YYIVGYLRAT  600
SLILFFLFIT ITQGQLTEAE SIFNLMKMAG CAPDVVTYTT MLHAYSATEN WEKACVLFQE  660
METNGIQLDV IACSALMRAF NKGGDPSRVL ILAEIMREKE IPFSDAIFFE MVSACSLLQD  720
WRTTMELIKL IEPSLPRVSI GLVNQLLRIL GRSGKVETMM KLFYKIVASS GDINFDTYSI  780
LLKNLLSVGN WRKYFEVLQW MVDAGIRPSS QMYLDISSFA HKSAGAEYAT LIKERIELLK  840
RKSGYQDSTS KPCDTHSTSS LISRTKEENH RLLESTMAGT YAVAEYHLGP KTESSGSGGG  900
EAEASEEVMA TDQLMVYRGV KKVKKERGCT EKERISKIPP CAAGKRSSIY RGVTRHRWTG  960
RYEAYLWDKG TWNQNQNKEG KQGAYDDEEA AARAYDLAAL KYWGPGTLIN FPVTDYTRDL  1020
EEMQNARRCQ GRNTLHLFGE RAVVSQEEFL NIVGLLGTGI DPATESELLG AFCIERKIDL  1080
TSYIKWWGPN RSRQAETGME SSEETKNGCV GDIGVELKTL EWGIQPTEPY QMPRLGFSHV  1140
SKKHKGTRVS AMSVLSWSAA YKNLQEKASQ MEENNADNDE NENKNTFHKM DYGKAVEKST  1200
SHDERLSSVL GMSGGISLQT DVFPLAPFLS APLLTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A2e-751118132448pentatricopeptide repeat protein dPPR-U10
5i9h_A2e-751118132448pentatricopeptide repeat protein dPPR-U8G2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002023.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363191.10.0PREDICTED: pentatricopeptide repeat-containing protein At2g41720
SwissprotQ8RWS80.0PP199_ARATH; Pentatricopeptide repeat-containing protein At2g41720
TrEMBLA0A498IHT00.0A0A498IHT0_MALDO; Uncharacterized protein
STRINGXP_009363191.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.25e-82AP2 family protein
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Aryamanesh N, et al.
    The Pentatricopeptide Repeat Protein EMB2654 Is Essential for Trans-Splicing of a Chloroplast Small Ribosomal Subunit Transcript.
    Plant Physiol., 2017. 173(2): p. 1164-1176
    [PMID:28011633]