PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002198.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 190aa    MW: 21394.2 Da    PI: 6.2754
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002198.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000153557123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Pbr002198.1 35 YECTFCKRGFTNAQALGGHMNIH 57
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-53161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.21E-73261No hitNo description
SMARTSM003550.00973557IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MESWRPRTPE TSSSDEDQVT SDDHNSGATT VKRSYECTFC KRGFTNAQAL GGHMNIHRKD  60
RVKPMQHISG TSSLNANHYS NEDQYISMST SHHHHQYSSA PLSSQGVSGY YPVLDQMNYR  120
MYFQPTGSNP RIPYGYDLDD SSVGSRSHSL GMNQELWGTN LSLQLEDDEF RRGVRSNDEV  180
DLELRLGHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002198.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184690.0HQ418469.1 Malus x domestica transcriptional regulator superman (SUP5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374780.11e-139PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLF6KKF61e-131F6KKF6_MALDO; Transcriptional regulator superman
STRINGXP_009348598.11e-140(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-15C2H2 family protein