PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002222.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 333aa    MW: 36735.1 Da    PI: 5.9267
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002222.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.51.9e-152668145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
      Pbr002222.1 26 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 68
                     899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-5619IPR009057Homeodomain-like
SuperFamilySSF466893.76E-20775IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-252076IPR009057Homeodomain-like
PROSITE profilePS5129425.2092175IPR017930Myb domain
SMARTSM007171.5E-152573IPR001005SANT/Myb domain
PfamPF002493.0E-142669IPR001005SANT/Myb domain
CDDcd001672.24E-112868No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRPGLQRCGK SCRLRWINYL RPDLKRGSFS PQEAALIIEL HSILGNRWAQ IAKHLPGRTD  60
NEVKNFWNSS IKKKLISHEV IPAFASFSND HIHNPSGHGS EEGFFTLNTN PNLCSQPQDQ  120
LYLPIVPSPV PSLGLNYHGD FNNILKLDQT NYASNFVDHF LPPFQLPSNN ASSYESSSWS  180
SGYQPQQQFD PNIQQVQNFS INEAAAAQYN NIGNELMVPI SVASSEPVAY ENPFILPTVP  240
KFCEIIDGNV CRMPILYPSD LQELDSLAKL SCFTSGHGSH PQDLQFPSNQ LECIDAIMSL  300
LPSSSSSSSP SSASPSLLPL SSSQFDANFN AH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2577540108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002222.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4765815e-48AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355527.10.0PREDICTED: transcription factor MYB26-like
RefseqXP_009355528.10.0PREDICTED: transcription factor MYB26-like
TrEMBLA0A498HC150.0A0A498HC15_MALDO; Uncharacterized protein
STRINGXP_009355527.10.0(Pyrus x bretschneideri)
STRINGXP_009355528.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.26e-47myb domain protein 26